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Also had problems with ntpd syncing, got an offset of -7294 seconds after reboot and ntpd was not able to sync up. Which is my internet modem with a timeserver which had -7294 seconds offset. This rpi runs home automation software and accurate time is critical (getting stuck without hot water because inaccurate clock is really annoying).
I am running raspbian wheezy, upgraded to all the latest packages.
The only custom package installed on it is Oracle's Java 8, everything else and its configuration is stock.
Ctrl F9 not only updated the values, but fixed the problem so it didn't happen again.
I had a case of this just now on Excel 2010: a particular spreadsheet that would not auto-recalculate.
If the drift file does not exist as ntpd starts, it enters a special mode designed to quickly adapt to the particular timing variances of the current hardware.